Detailed information of SNP:



SNP ID: sf0112830015(Gbrowse)

Chromosome: chr01

Position: 12830015
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 98.16% 1.84%
All Indica797 99.75% 0.25%
All Japonica496 95.16% 4.84%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate209 99.52% 0.48%
Temperate Japonica335 97.91% 2.09%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate67 98.51% 1.49%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0112830015 C->T INTERGENIC None