Detailed information of SNP:
|
SNP ID:
sf0112877660(Gbrowse)
Chromosome: chr01 Position: 12877660 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 90.74% | 9.26% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 419 | 71.60% | 28.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 60.22% | 39.78% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 82.46% | 17.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112877660 | A->C | LOC_Os01g22910(LOC_Os01g22910.1) | INTRON |