Detailed information of SNP:
|
SNP ID:
sf0112880380(Gbrowse)
Chromosome: chr01 Position: 12880380 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.20% | 9.80% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112880380 | G->A | LOC_Os01g22910(LOC_Os01g22910.1) | INTRON |