Detailed information of SNP:
|
SNP ID:
sf0112927796(Gbrowse)
Chromosome: chr01 Position: 12927796 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1327 | 84.10% | 15.90% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 409 | 60.39% | 39.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 284 | 50.00% | 50.00% |
| Tropical Japonica | 79 | 87.34% | 12.66% |
| Japonica Intermediate | 46 | 78.26% | 21.74% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112927796 | A->G | INTERGENIC | None |