Detailed information of SNP:
|
SNP ID:
sf0112930528(Gbrowse)
Chromosome: chr01 Position: 12930528 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 68.24% | 31.76% |
| All Indica | 778 | 93.57% | 6.43% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 193 | 98.96% | 1.04% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 33.13% | 66.87% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112930528 | C->T | INTERGENIC | None |