Detailed information of SNP:
|
SNP ID:
sf0112938975(Gbrowse)
Chromosome: chr01 Position: 12938975 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 77.28% | 22.72% |
| All Indica | 790 | 68.86% | 31.14% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 63 | 17.46% | 82.54% |
| Indica I | 370 | 61.89% | 38.11% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112938975 | G->A | INTERGENIC | None |