Detailed information of SNP:
|
SNP ID:
sf0112940953(Gbrowse)
Chromosome: chr01 Position: 12940953 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 67.63% | 32.37% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 494 | 11.34% | 88.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 92 | 43.48% | 56.52% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112940953 | A->G | INTERGENIC | None |