Detailed information of SNP:
|
SNP ID:
sf0112971522(Gbrowse)
Chromosome: chr01 Position: 12971522 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 60.00% | 40.00% |
| All Indica | 754 | 95.49% | 4.51% |
| All Japonica | 480 | 7.71% | 92.29% |
| Aus | 38 | 31.58% | 68.42% |
| Indica I | 347 | 95.10% | 4.90% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 200 | 94.50% | 5.50% |
| Temperate Japonica | 331 | 1.51% | 98.49% |
| Tropical Japonica | 82 | 34.15% | 65.85% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 34 | 41.18% | 58.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112971522 | G->A | INTERGENIC | None |