Detailed information of SNP:
|
SNP ID:
sf0112985500(Gbrowse)
Chromosome: chr01 Position: 12985500 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 85.49% | 14.51% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 484 | 59.92% | 40.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 47.43% | 52.57% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0112985500 | T->C | INTERGENIC | None |