Detailed information of SNP:
|
SNP ID:
sf0113025912(Gbrowse)
Chromosome: chr01 Position: 13025912 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 98.09% | 1.91% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113025912 | C->A | LOC_Os01g23180(LOC_Os01g23180.1) | INTRON |
| sf0113025912 | C->A | LOC_Os01g23180(LOC_Os01g23180.1) | SNPs that disrupt splice sites |