Detailed information of SNP:
|
SNP ID:
sf0113026078(Gbrowse)
Chromosome: chr01 Position: 13026078 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 97.17% | 2.83% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113026078 | G->A | LOC_Os01g23180(LOC_Os01g23180.1) | Synonymous |