Detailed information of SNP:
|
SNP ID:
sf0113026822(Gbrowse)
Chromosome: chr01 Position: 13026822 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 91.20% | 8.80% |
| All Indica | 755 | 84.90% | 15.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 353 | 83.85% | 16.15% |
| Indica II | 203 | 86.21% | 13.79% |
| Indica Intermediate | 199 | 85.43% | 14.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113026822 | A->G | LOC_Os01g23180(LOC_Os01g23180.1) | INTRON |