Detailed information of SNP:
|
SNP ID:
sf0113033067(Gbrowse)
Chromosome: chr01 Position: 13033067 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 72.46% | 27.54% |
| All Indica | 781 | 98.21% | 1.79% |
| All Japonica | 460 | 25.43% | 74.57% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 99.18% | 0.82% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 330 | 31.52% | 68.48% |
| Tropical Japonica | 62 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113033067 | A->G | LOC_Os01g23200(LOC_Os01g23200.1) | Non-Synonymous SNP |