Detailed information of SNP:
|
SNP ID:
sf0113080673(Gbrowse)
Chromosome: chr01 Position: 13080673 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 51.13% | 48.87% |
| All Indica | 767 | 26.99% | 73.01% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 55 | 25.45% | 74.55% |
| Indica I | 359 | 26.46% | 73.54% |
| Indica II | 202 | 23.76% | 76.24% |
| Indica Intermediate | 206 | 31.07% | 68.93% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113080673 | T->C | LOC_Os01g23290(LOC_Os01g23290.1) | Synonymous |