Detailed information of SNP:



SNP ID: sf0113095158(Gbrowse)

Chromosome: chr01

Position: 13095158
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1401 85.15% 14.85%
All Indica798 99.87% 0.13%
All Japonica481 58.21% 41.79%
Aus67 100.00% 0.00%
Indica I374 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica329 47.42% 52.58%
Tropical Japonica90 93.33% 6.67%
Japonica Intermediate62 64.52% 35.48%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 85.37% 14.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0113095158 C->A LOC_Os01g23320(LOC_Os01g23320.1) Non-Synonymous SNP