Detailed information of SNP:



SNP ID: sf0113099506(Gbrowse)

Chromosome: chr01

Position: 13099506
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 97.18% 2.82%
All Indica799 99.50% 0.50%
All Japonica496 92.94% 7.06%
Aus67 100.00% 0.00%
Indica I375 98.93% 1.07%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica93 65.59% 34.41%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0113099506 G->A INTERGENIC None