Detailed information of SNP:
|
SNP ID:
sf0113105774(Gbrowse)
Chromosome: chr01 Position: 13105774 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 59.65% | 40.35% |
| All Indica | 792 | 92.17% | 7.83% |
| All Japonica | 495 | 1.41% | 98.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 93.80% | 6.20% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113105774 | T->C | LOC_Os01g23330(LOC_Os01g23330.1) | INTRON |