Detailed information of SNP:
|
SNP ID:
sf0113184121(Gbrowse)
Chromosome: chr01 Position: 13184121 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 89.18% | 10.82% |
| All Indica | 741 | 80.84% | 19.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 55 | 98.18% | 1.82% |
| Indica I | 347 | 78.67% | 21.33% |
| Indica II | 200 | 78.50% | 21.50% |
| Indica Intermediate | 194 | 87.11% | 12.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113184121 | G->A | LOC_Os01g23470(LOC_Os01g23470.1) | SNPs that introduce stop codons |