Detailed information of SNP:
|
SNP ID:
sf0113290479(Gbrowse)
Chromosome: chr01 Position: 13290479 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.82% | 25.18% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113290479 | A->G | LOC_Os01g23630(LOC_Os01g23630.1) | SNPs that introduce initiation codons |