Detailed information of SNP:
|
SNP ID:
sf0113338631(Gbrowse)
Chromosome: chr01 Position: 13338631 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.22% | 26.78% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 496 | 29.23% | 70.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 24.85% | 75.15% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113338631 | A->G | INTERGENIC | None |