Detailed information of SNP:
|
SNP ID:
sf0113339306(Gbrowse)
Chromosome: chr01 Position: 13339306 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 92.23% | 7.77% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 496 | 86.90% | 13.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113339306 | A->G | LOC_Os01g23700(LOC_Os01g23700.1) | Synonymous |