Detailed information of SNP:
|
SNP ID:
sf0113343578(Gbrowse)
Chromosome: chr01 Position: 13343578 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.88% | 37.12% |
| All Indica | 797 | 82.18% | 17.82% |
| All Japonica | 497 | 25.96% | 74.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 22.69% | 77.31% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113343578 | T->A | LOC_Os01g23710(LOC_Os01g23710.1) | INTRON |