Detailed information of SNP:
|
SNP ID:
sf0113348446(Gbrowse)
Chromosome: chr01 Position: 13348446 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1272 | 90.25% | 9.75% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 353 | 67.99% | 32.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 227 | 54.63% | 45.37% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 46 | 80.43% | 19.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113348446 | T->C | INTERGENIC | None |