Detailed information of SNP:
|
SNP ID:
sf0113353217(Gbrowse)
Chromosome: chr01 Position: 13353217 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.99% | 31.01% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113353217 | T->C | LOC_Os01g23740(LOC_Os01g23740.2) | INTRON |
| sf0113353217 | T->C | LOC_Os01g23740(LOC_Os01g23740.1) | INTRON |