Detailed information of SNP:
|
SNP ID:
sf0113383458(Gbrowse)
Chromosome: chr01 Position: 13383458 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 87.36% | 12.64% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 425 | 68.00% | 32.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 278 | 54.68% | 45.32% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 60 | 85.00% | 15.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113383458 | T->C | INTERGENIC | None |