Detailed information of SNP:
|
SNP ID:
sf0113418680(Gbrowse)
Chromosome: chr01 Position: 13418680 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 95.61% | 4.39% |
| All Indica | 782 | 97.70% | 2.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 36.67% | 63.33% |
| Indica I | 367 | 97.82% | 2.18% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113418680 | C->A | INTERGENIC | None |