Detailed information of SNP:
|
SNP ID:
sf0113457697(Gbrowse)
Chromosome: chr01 Position: 13457697 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 66.71% | 33.29% |
| All Indica | 796 | 98.12% | 1.88% |
| All Japonica | 496 | 11.09% | 88.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113457697 | C->A | INTERGENIC | None |