Detailed information of SNP:
|
SNP ID:
sf0113479543(Gbrowse)
Chromosome: chr01 Position: 13479543 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1287 | 92.00% | 8.00% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 369 | 73.44% | 26.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 240 | 61.67% | 38.33% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 88.24% | 11.76% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113479543 | G->C | LOC_Os01g23960(LOC_Os01g23960.1) | Non-Synonymous SNP |