Detailed information of SNP:
|
SNP ID:
sf0113490711(Gbrowse)
Chromosome: chr01 Position: 13490711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 94.58% | 5.42% |
| All Indica | 767 | 92.18% | 7.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 363 | 95.87% | 4.13% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 192 | 78.65% | 21.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113490711 | G->A | INTERGENIC | None |