Detailed information of SNP:
|
SNP ID:
sf0113490917(Gbrowse)
Chromosome: chr01 Position: 13490917 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 91.55% | 8.45% |
| All Indica | 779 | 87.29% | 12.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 368 | 92.39% | 7.61% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 199 | 67.84% | 32.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113490917 | C->G | INTERGENIC | None |