Detailed information of SNP:
|
SNP ID:
sf0113499307(Gbrowse)
Chromosome: chr01 Position: 13499307 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 91.80% | 8.20% |
| All Indica | 776 | 91.24% | 8.76% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 93.85% | 6.15% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113499307 | A->G | LOC_Os01g23980(LOC_Os01g23980.1) | Non-Synonymous SNP |