Detailed information of SNP:
|
SNP ID:
sf0113506273(Gbrowse)
Chromosome: chr01 Position: 13506273 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 67.47% | 32.53% |
| All Indica | 789 | 47.91% | 52.09% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 369 | 44.72% | 55.28% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 208 | 37.02% | 62.98% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113506273 | C->G | INTERGENIC | None |