Detailed information of SNP:
|
SNP ID:
sf0113509388(Gbrowse)
Chromosome: chr01 Position: 13509388 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 97.43% | 2.57% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 402 | 91.79% | 8.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 265 | 99.25% | 0.75% |
| Tropical Japonica | 80 | 80.00% | 20.00% |
| Japonica Intermediate | 57 | 73.68% | 26.32% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113509388 | G->A | INTERGENIC | None |