Detailed information of SNP:
|
SNP ID:
sf0113510165(Gbrowse)
Chromosome: chr01 Position: 13510165 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 53.67% | 46.33% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 11.07% | 88.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113510165 | T->C | INTERGENIC | None |