Detailed information of SNP:
|
SNP ID:
sf0113512059(Gbrowse)
Chromosome: chr01 Position: 13512059 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 89.65% | 10.35% |
| All Indica | 774 | 84.37% | 15.63% |
| All Japonica | 486 | 98.97% | 1.03% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 356 | 87.92% | 12.08% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 205 | 65.85% | 34.15% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113512059 | C->T | INTERGENIC | None |