Detailed information of SNP:
|
SNP ID:
sf0113516971(Gbrowse)
Chromosome: chr01 Position: 13516971 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 73.82% | 26.18% |
| All Indica | 797 | 64.37% | 35.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 55.88% | 44.12% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113516971 | G->C | LOC_Os01g24010(LOC_Os01g24010.1) | INTRON |