Detailed information of SNP:
|
SNP ID:
sf0113516978(Gbrowse)
Chromosome: chr01 Position: 13516978 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.49% | 28.51% |
| All Indica | 797 | 60.98% | 39.02% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 55.88% | 44.12% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113516978 | T->C | LOC_Os01g24010(LOC_Os01g24010.1) | INTRON |