Detailed information of SNP:
|
SNP ID:
sf0113518116(Gbrowse)
Chromosome: chr01 Position: 13518116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 73.94% | 26.06% |
| All Indica | 796 | 63.69% | 36.31% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 373 | 56.30% | 43.70% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113518116 | G->A | LOC_Os01g24010(LOC_Os01g24010.1) | INTRON |