Detailed information of SNP:
|
SNP ID:
sf0113543020(Gbrowse)
Chromosome: chr01 Position: 13543020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 77.01% | 22.99% |
| All Indica | 750 | 71.20% | 28.80% |
| All Japonica | 487 | 93.63% | 6.37% |
| Aus | 64 | 26.56% | 73.44% |
| Indica I | 360 | 67.50% | 32.50% |
| Indica II | 192 | 77.60% | 22.40% |
| Indica Intermediate | 198 | 71.72% | 28.28% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 86 | 73.26% | 26.74% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113543020 | C->T | LOC_Os01g24040(LOC_Os01g24040.1) | INTRON |