Detailed information of SNP:
|
SNP ID:
sf0113549017(Gbrowse)
Chromosome: chr01 Position: 13549017 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.37% | 24.63% |
| All Indica | 799 | 59.32% | 40.68% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 48.00% | 52.00% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113549017 | G->A | INTERGENIC | None |