Detailed information of SNP:
|
SNP ID:
sf0113549912(Gbrowse)
Chromosome: chr01 Position: 13549912 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.09% | 36.91% |
| All Indica | 799 | 49.94% | 50.06% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 56.27% | 43.73% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113549912 | T->C | LOC_Os01g24050(LOC_Os01g24050.1) | INTRON |