Detailed information of SNP:
|
SNP ID:
sf0113552596(Gbrowse)
Chromosome: chr01 Position: 13552596 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 95.57% | 4.43% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 479 | 91.44% | 8.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 322 | 98.14% | 1.86% |
| Tropical Japonica | 91 | 64.84% | 35.16% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113552596 | C->T | LOC_Os01g24050(LOC_Os01g24050.1) | INTRON |