Detailed information of SNP:
|
SNP ID:
sf0113560425(Gbrowse)
Chromosome: chr01 Position: 13560425 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.80% | 48.20% |
| All Indica | 799 | 82.48% | 17.52% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113560425 | C->T | LOC_Os01g24060(LOC_Os01g24060.1) | INTRON |
| sf0113560425 | C->T | LOC_Os01g24060(LOC_Os01g24060.2) | INTRON |