Detailed information of SNP:
|
SNP ID:
sf0113569295(Gbrowse)
Chromosome: chr01 Position: 13569295 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1259 | 91.10% | 8.90% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 342 | 69.01% | 30.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 228 | 57.89% | 42.11% |
| Tropical Japonica | 71 | 97.18% | 2.82% |
| Japonica Intermediate | 43 | 81.40% | 18.60% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113569295 | A->G | INTERGENIC | None |