Detailed information of SNP:
|
SNP ID:
sf0113571654(Gbrowse)
Chromosome: chr01 Position: 13571654 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.28% | 22.72% |
| All Indica | 797 | 72.65% | 27.35% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113571654 | G->A | LOC_Os01g24070(LOC_Os01g24070.1) | UTR_3_PRIME |
| sf0113571654 | G->A | LOC_Os01g24070(LOC_Os01g24070.2) | UTR_3_PRIME |