Detailed information of SNP:
|
SNP ID:
sf0113575660(Gbrowse)
Chromosome: chr01 Position: 13575660 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.52% | 27.48% |
| All Indica | 799 | 62.83% | 37.17% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 56.53% | 43.47% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113575660 | T->C | INTERGENIC | None |