Detailed information of SNP:
|
SNP ID:
sf0113582466(Gbrowse)
Chromosome: chr01 Position: 13582466 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.00% | 6.00% |
| All Indica | 797 | 90.59% | 9.41% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113582466 | C->T | LOC_Os01g24090(LOC_Os01g24090.2) | INTRON |
| sf0113582466 | C->T | LOC_Os01g24090(LOC_Os01g24090.1) | INTRON |