Detailed information of SNP:
|
SNP ID:
sf0113583283(Gbrowse)
Chromosome: chr01 Position: 13583283 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.42% | 49.58% |
| All Indica | 796 | 30.53% | 69.47% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.40% | 61.60% |
| Indica II | 210 | 7.14% | 92.86% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113583283 | A->G | LOC_Os01g24090(LOC_Os01g24090.2) | Non-Synonymous SNP |
| sf0113583283 | A->G | LOC_Os01g24090(LOC_Os01g24090.1) | INTRON |