Detailed information of SNP:
|
SNP ID:
sf0113583860(Gbrowse)
Chromosome: chr01 Position: 13583860 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.19% | 35.81% |
| All Indica | 796 | 40.20% | 59.80% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 47.18% | 52.82% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113583860 | G->A | LOC_Os01g24090(LOC_Os01g24090.2) | UTR_5_PRIME |
| sf0113583860 | G->A | LOC_Os01g24090(LOC_Os01g24090.1) | UTR_5_PRIME |