Detailed information of SNP:
|
SNP ID:
sf0113599880(Gbrowse)
Chromosome: chr01 Position: 13599880 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 87.04% | 12.96% |
| All Indica | 794 | 78.21% | 21.79% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 69.97% | 30.03% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113599880 | G->A | INTERGENIC | None |